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Extra info for Computational Methods in Systems Biology: 7th International Conference, CMSB 2009, Bologna, Italy, August 31-September 1, 2009. Proceedings
These include co-immunoprecipitation, co-localisation by microscopy or via proteomics techniques such as two-hybrid interactions or mass spectroscopy . de/). Thus a binding event in the model can be linked to the existence of an experimentally veriﬁed binding event in the database as a concatenation of two (or more) strings. In addition as the model is run computationally it will generate outputs which refer to a potential biological experiment of the form does a complex between component A and component B exist at time T in compartment X?
Zamborsky for useful discussions. The authors thank F. Benedetti and the CoSBi development team for the implementation of BlenX4Bio. References 1. net/ 2. : The Beta Workbench: a computational tool to study the dynamics of biological systems. Brief. Bioinform. 9(5), 437–449 (2008) 3. : The BlenX Language: A Tutorial. , Zavattaro, G. ) SFM 2008. LNCS, vol. 5016, pp. 313–365. Springer, Heidelberg (2008) 4. : Narrativebased computational modelling of the gp130/jak/stat signalling pathway. BMC Systems Biology 3(40) (2009) 5.
Net/ 2. : The Beta Workbench: a computational tool to study the dynamics of biological systems. Brief. Bioinform. 9(5), 437–449 (2008) 3. : The BlenX Language: A Tutorial. , Zavattaro, G. ) SFM 2008. LNCS, vol. 5016, pp. 313–365. Springer, Heidelberg (2008) 4. : Narrativebased computational modelling of the gp130/jak/stat signalling pathway. BMC Systems Biology 3(40) (2009) 5. : Process calculi abstractions for biology. , Winfree, E. ) Algorithmic Bioprocesses. Springer, Heidelberg (2009) 6. : An automated translation from a narrative language for biological modelling into process algebra.